Documents

Access the Apiary Project's Presentations, Publications, Metadata Schema, and Downloads.

Presentations



An Event Model for Herbarium Specimen Data in XML
Moen, William E.
Best, Jason H.
Neill, Amanda K.
McCotter, Melody
Xu, Hong
Huang, Jane Q.

Presented at the 2010 Taxonomic Database Working Group meeting, Marine Biological Laboratory, Woods Hole, USA, Sunday 26th September - Friday 1st October 2010.



An Application Profile Using Darwin Core Rendered in the New Dublic Core Application Profile Framework
Moen, William E.
Huang, Jane Q.
McCotter, Melody J.
Best, Jason
Neill, Amanda

Moen, W. E., Huang, J. Q., McCotter, M. J., Best, J. & Neill, A. K. (2009, November). An Application Profile Using Darwin Core Rendered in the New Dublic Core Application Profile Framework. Poster session presented at the Taxonomic Database Working Group conference, Montpellier, France.



The Apiary Project: High-Throughput Workflow for Computer-Assisted Human Parsing of Biological Specimen Label Data
Jason Best
Amanda Neill
William E. Moen

Society for the Preservation of Natural History Collections 2009 - Leiden, The Netherlands
(PowerPoint, 5.4 MB)



Publications



An Event Model for Herbarium Specimen Data in XML
Moen, William E.
Best, Jason H.
Neill, Amanda K.
McCotter, Melody
Xu, Hong
Huang, Jane Q.

Presented at the 2010 Taxonomic Database Working Group meeting, Marine Biological Laboratory, Woods Hole, USA, Sunday 26th September - Friday 1st October 2010.



Extracting and parsing of herbarium specimen data: Exploring the use of the Dublin Core Application Profile framework.
Moen, W. E.
Huang, J.
McCotter, M.
Neill, A.
Best, J.

Moen, W. E. , Huang, J., McCotter, M., Neill, A., & Best, J. (2010) Extracting and parsing of herbarium specimen data: Exploring the use of the Dublin Core Application Profile framework. In proceedings of IConference 2010, University of Illinois at Urbana-Champaign, February 3 - 6, 2010, pp. 154 - 160. http://nora.lis.uiuc.edu/images/iConferences/2010papers_Allen-Ortiz. 



An Application Profile Using Darwin Core Rendered in the New Dublic Core Application Profile Framework
Moen, William E.
Huang, Jane Q.
McCotter, Melody J.
Best, Jason
Neill, Amanda

Moen, W. E., Huang, J. Q., McCotter, M. J., Best, J. & Neill, A. K. (2009, November). An Application Profile Using Darwin Core Rendered in the New Dublic Core Application Profile Framework. Poster session presented at the Taxonomic Database Working Group conference, Montpellier, France.



High-Throughput Workflow for Computer-Assisted Human Parsing of Biological Specimen Label Data. IMLS Grant Proposal.
Moen, W.E.
Best, J.
Neill, A.

Moen, W.E., Best, J., Neill, A. (2008) High-Throughput Workflow for Computer-Assisted Human Parsing of Biological Specimen Label Data. IMLS Grant Proposal.



Metadata Schema



The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.

Apiary Generic RDF Schema
Hong Xu
Jane Huang

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.
Draft as of 10/21/10



Apiary Generic RDF Schema User's Guide
Jane Huang
Hong Xu

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.
Draft as of 10/21/10



Apiary Generic RDF Schema User's Guide
Moen, William E.
Xu, Hong

 This document is intended to guide the implementation of the Apiary Generic RDF Schema.



Apiary Generic RDF Schema


Apiary Vocubulary Terms in RDF v1.0


Expressing Apiary Vocabulary Terms in RDF Huang, Jane Q.

 Draft document



Verbatim Coordinate System Vocabulary Schema


Type Designation Vocabulary Schema


Taxonomic Status Vocabulary Schema


Taxon Rank Vocabulary Schema


Sex Vocabulary Schema


Reproductive Condition Vocabulary Schema


Preparations Vocabulary Schema


Occurrence Status Vocabulary Schema


Nomenclatural Code Vocabulary Schema


Life Stage Vocabulary Schema


Identification Status Vocabulary Schema


Georeference Verification Status Vocabulary Schema


Establishment Means Vocabulary Schema


Disposition Vocabulary Schema


Behavior Vocabulary Schema


Basis of Record Vocabulary Schema


Basis of Annotation Vocabulary Schema


Apiary METS profile


Generic Apiary Schema v3.2 Users Guide
Moen, William E.
Xu, Hong

 This document is intended to guide the use of the Generic Apiary Schema.



Generic Apiary Schema v3.2


Apiary Application Schema Guide v3.2
Huang, Jane Q.
Xu, Hong

 This document is intended to guide the use of the Apiary Application Schema.



Apiary Application Schema v3.2 Apiary Project Team


ApiaryApplicationSchemaCombinedVocabulary_v3.2_April19_2011.xsd

Apiary Application Schema developed by Apiary project team, compiled by Jane Q. Huang. and Hong Xu(2011.04.19).



Apiary Metadata Vocabulary v1.9 Apiary Project Team

The Apiary Metadata Vocabulary comprises an evolving set of terms (also known as properties or elements) needed to support the Apiary Project and for complete description of specimens and objects.



Apiary Application Schema User's Guide
Jane Huang
Hong Xu
Amanda Neill

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.
Draft as of 9/20/10



Apiary Generic Schema User's Guide
Hong Xu
Jane Huang
Amanda Neill

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.
Draft as of 11/23/10



Apiary Generic Schema
Jane Q. Huang
Hong Xu
Melody McCotter

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.

Draft as of 11/23/10



Apiary Application Schema
Hong Xu
Jane Q. Huang
Melody McCotter
Amanda Neill

The following schema documents are in draft state. They are published here for demonstration of the ongoing schema development within the Apiary Project, and are not intended for implementation at this time.

Draft as of 10/10/10



Apiary Classes Schema
Hong Xu
Jane Q. Huang
Melody McCotter

Draft as of 9/8/10



Download



Apiary Workflow 1.0 Virtual Machine Image for Virtual Box Sean Murphy

This is a virtual machine image for the Apiary Workflow version 1.0.0. This virtual machine allows you to evaluate Apiary on your own computer using Oracle VirtualBox. The file is 3.2 Gigabytes.
Download - 3.2GB
VirtualBox is available at www.virtualbox.org